One can retrieve allele frequencies and genotype frequencies for all the populations in HapMap in a nice tabular format using their BioMart HapMart interface available here:
http://hapmap.ncbi.nlm.nih.gov/biomart/martview
This is a very nice interface, which is relatively easy to use.
The same interface also generates Perl code for the same query, which then could easily be reused in a program if needed.
Dr. Weeks is a Professor of Human Genetics and Biostatistics at the University of Pittsburgh. His research focuses on statistical human genetics in the area of mapping susceptibility loci involved in complex human diseases. The content on this blog is for informational purposes only - use at your own risk!
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