Monday, October 26, 2009

HapMap BioMart interface

One can retrieve allele frequencies and genotype frequencies for all the populations in HapMap in a nice tabular format using their BioMart HapMart interface available here:

http://hapmap.ncbi.nlm.nih.gov/biomart/martview

This is a very nice interface, which is relatively easy to use.

The same interface also generates Perl code for the same query, which then could easily be reused in a program if needed.

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