I really like the way they plotted their GWAs results in this paper:
International Multiple Sclerosis Genetics Consortium; Wellcome Trust Case
Control Consortium. Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis. Nature. 2011 Aug 10;476(7359):214-9. doi: 10.1038/nature10251. PubMed PMID: 21833088.
Try out their elegant interactive version of their GWAs Figure at:
http://wattle.well.ox.ac.uk/wtccc2/external/ms/
